A plant economics spectrum in Mediterranean forests along environmental gradients: Is there coordination among leaf, stem and root traits?

12 páginas..- 4 figuras.-- 70 referencias.--Supporting Information: Additional Supporting Information may be found in the online version of this article: Appendix S1. Species list.--Appendix S2. Functional traits list.--Appendix S3. Phylogenetic tree.-- Appendix S4. Pearson correlation coefficients between traits.-- Appendix S5. Relationships between morphologicaltraits, carbon isotope fraction and leaf chlorophyll.-- Appendix S6. Phylogenetic generalized least square analysis.-- Appendix S7. Non-metric multidimensional scaling analysis.-- Appendix S8. Illustration of the scale effects.Questions: Is there any evidence of coordination among leaf, stem and root traits, and thereby of the existence of a plant economics spectrum at the species and community level in Mediterranean forests? Are these traits related to plant size and seed mass? Location: Mediterranean forests and shrublands, Sierra Morena mountains, Córdoba, southern Spain. Methods: We selected nine woody plant communities along a natural local gradient of soil water and nutrient availability. We measured key leaf, stem, root and whole-plant traits for 38 dominant woody plant species. The variation across species of 15 functional traits (of the leaf, stem and root) was analysed and coordination among them was tested. We explored the relationships between these traits (hereafter 'resource-use traits' due to their close association with the acquisition-conservation trade-off) and plant height and seed mass. Finally, we compared results at species level with those calculated at community level, considering community-weighted means (CWMs). Results: We found a significant coordination between traits belonging to different plant organs, and propose the existence of a plant economics spectrum in Mediterranean forests along the environmental gradient. However, weaker relationships were found within groups of species under similar environmental conditions. We did not find the expected orthogonal relationships between plant height, seed mass and resource-use traits. Relationships among functional traits were stronger at the community level than at the species level. Conclusions: This study reveals a high degree of functional coordination between traits belonging to different plant organs at both species and community level, and suggests the existence of a plant economics spectrum across 38 Mediterranean woody plant species. However, this general trend of functional coordination between organs became weaker or disappeared when considering restricted groups of species belonging to environmentally similar sites (e.g. dry vs wet sites), suggesting that the diversification of strategies within communities is not related to the economics spectrum at a lower spatial scale. Interestingly, the high degree of coordination between resource-use traits and seed mass at the community level seems to support the tolerance-fecundity model, which predicts an inverse relationship between fecundity and stress tolerance. © 2015 International Association for Vegetation Science.We thank Miguel Verdú for help with the phylogenetic tree and analyses and Jose Rafael Vera for plant trait analyses. We also thank Jard ın Botánico de Córdoba (Francisca Herrera) and the Semillas Cantueso Company (José Angel Cantueso) for providing seedmass data. We are very grateful to Francesco de Bello for interesting comments on previous versions of the manuscript. This study was funded by the Spanish MEC coordinated project DIVERBOS (CGL2011-30285-C02-01 and C02-02), the Andalusian ANASINQUE project (PGC2010-RNM-5782), the Life + Biodehesa Project (11/BIO/ES/000726), ECO-MEDIT (CGL2014-53236-R) and European FEDER funds. Dr. DavidWalker revised the Englis

Papel de los factores bióticos y las sequías en el decaimiento del bosque: aportaciones desde la dendroecología

[ES] El aumento de la mortalidad y la pérdida de vitalidad de los bosques son procesos que afectan a diversas especies de árboles y biomas. Estos fenómenos de decaimiento forestal se han asociado a la interacción de múltiples factores relacionados con el cambio global, como el aumento de las sequías o la mayor incidencia de factores bióticos que generan estrés. Sin embargo, el papel que juegan estos organismos en el decaimiento del bosque en relación a la sequía no está del todo comprendido. En este trabajo caracterizamos retrospectivamente los efectos que ejercen dichos organismos sobre el crecimiento radial de árboles estresados por sequía utilizando dendrocronología. El efecto combinado del muérdago y las sequías reducen el crecimiento del pino silvestre y aumentan la defoliación, siendo estos efectos más evidentes en el ápice del árbol. La procesionaria induce pérdidas de crecimiento en pino laricio, pero en general se observa una recuperación dos años después. No encontramos un papel determinante de los hongos patógenos de raíz en el decaimiento del abeto. Finalmente, pinos carrasco muertos que presentaban ataques de insectos perforadores mostraron patrones de crecimiento similares a pinos vivos. Este estudio nos permite caracterizar algunos de los complejos y múltiples efectos de diferentes factores bióticos de estrés sobre el crecimiento y la vulnerabilidad de los bosques susceptibles a los efectos negativos de las sequías.[EN] Increasing mortality and decline of forests are affecting several tree species and biomes. These events of forest decline have been related to the interaction of several global change elements, like the increase in drought stress or a higher incidence of biotic stress factors. However, the roles played by biotic stressors have been scarcely explored as related to drought stress. In this paper we retrospectively characterize the effects of these organisms on radial growth of trees already stressed by drought using dendrochronology. The combined effect of mistletoe and droughts reduce tree growth in Scots pine and increase defoliation, being these effects more noticeable in the apex. The pine processionary moth induces growth losses in the affected stands of black pine, but they usually recover two years after the outbreak. We did not find a determinate role of root pathogens on silver fir dieback. Finally, dead Aleppo pine trees infested by bark beetles showed similar growth patterns than living pine trees. This study allows characterizing some of the complex and multiple effects of different biotic stressors on growth and vulnerability of forests subjected to the negative effects exerted by droughts.Este estudio ha sido financiado por los proyectos CGL2007- 66066-C04-02/BOS, CGL2008-04847-C02-01, CGL2011-26654 (MINECO), 387/2011 (Organismo Autónomo de Parques Nacionales) y PROCLIM (La Caixa-Gobierno de Aragón). Agradecemos la revisión realizada por dos revisores anónimos de una versión previa del texto. También queremos agradecer la ayuda prestada por todos los miembros del Laboratorio de Sanidad Forestal de Mora de Rubielos (Gobierno de Aragón), a todo el personal del Parque Nacional de Ordesa y Monte Perdido, al servicio de parques y jardines del Ayuntamiento de Zaragoza (Montserrat Hernández y José Bellosta), y a todos los APNs que nos han ayudado en las numerosas jornadas de campo. Finalmente, agradecemos a nuestros compañeros del IPE (CSIC) J.D. Galván y A.Q. Alla por su ayuda en los muestreos y la discusión de las ideas presentadas.Peer Reviewe

Graph theory-based sequence descriptors as remote homology predictors

Indexación: Scopus.Alignment-free (AF) methodologies have increased in popularity in the last decades as alternative tools to alignment-based (AB) algorithms for performing comparative sequence analyses. They have been especially useful to detect remote homologs within the twilight zone of highly diverse gene/protein families and superfamilies. The most popular alignment-free methodologies, as well as their applications to classification problems, have been described in previous reviews. Despite a new set of graph theory-derived sequence/structural descriptors that have been gaining relevance in the detection of remote homology, they have been omitted as AF predictors when the topic is addressed. Here, we first go over the most popular AF approaches used for detecting homology signals within the twilight zone and then bring out the state-of-the-art tools encoding graph theory-derived sequence/structure descriptors and their success for identifying remote homologs. We also highlight the tendency of integrating AF features/measures with the AB ones, either into the same prediction model or by assembling the predictions from different algorithms using voting/weighting strategies, for improving the detection of remote signals. Lastly, we briefly discuss the efforts made to scale up AB and AF features/measures for the comparison of multiple genomes and proteomes. Alongside the achieved experiences in remote homology detection by both the most popular AF tools and other less known ones, we provide our own using the graphical–numerical methodologies, MARCH-INSIDE, TI2BioP, and ProtDCal. We also present a new Python-based tool (SeqDivA) with a friendly graphical user interface (GUI) for delimiting the twilight zone by using several similar criteria.https://www.mdpi.com/2218-273X/10/1/2

Developement of real time diagnostics and feedback algorithms for JET in view of the next step

Real time control of many plasma parameters will be an essential aspect in the development of reliable high performance operation of Next Step Tokamaks. The main prerequisites for any feedback scheme are the precise real-time determination of the quantities to be controlled, requiring top quality and highly reliable diagnostics, and the availability of robust control algorithms. A new set of real time diagnostics was recently implemented on JET to prove the feasibility of determining, with high accuracy and time resolution, the most important plasma quantities. With regard to feedback algorithms, new model–based controllers were developed to allow a more robust control of several plasma parameters. Both diagnostics and algorithms were successfully used in several experiments, ranging from H-mode plasmas to configuration with ITBs. Since elaboration of computationally heavy measurements is often required, significant attention was devoted to non-algorithmic methods like Digital or Cellular Neural/Nonlinear Networks. The real time hardware and software adopted architectures are also described with particular attention to their relevance to ITER.Comment: 12th International Congress on Plasma Physics, 25-29 October 2004, Nice (France

Transcriptome Remodeling Contributes to Epidemic Disease Caused by the Human Pathogen Streptococcus pyogenes

For over a century, a fundamental objective in infection biology research has been to understand the molecular processes contributing to the origin and perpetuation of epidemics. Divergent hypotheses have emerged concerning the extent to which environmental events or pathogen evolution dominates in these processes. Remarkably few studies bear on this important issue. Based on population pathogenomic analysis of 1,200 Streptococcus pyogenes type emm89 infection isolates, we report that a series of horizontal gene transfer events produced a new pathogenic genotype with increased ability to cause infection, leading to an epidemic wave of disease on at least two continents. In the aggregate, these and other genetic changes substantially remodeled the transcriptomes of the evolved progeny, causing extensive differential expression of virulence genes and altered pathogen-host interaction, including enhanced immune evasion. Our findings delineate the precise molecular genetic changes that occurred and enhance our understanding of the evolutionary processes that contribute to the emergence and persistence of epidemically successful pathogen clones. The data have significant implications for understanding bacterial epidemics and for translational research efforts to blunt their detrimental effects. IMPORTANCE The confluence of studies of molecular events underlying pathogen strain emergence, evolutionary genetic processes mediating altered virulence, and epidemics is in its infancy. Although understanding these events is necessary to develop new or improved strategies to protect health, surprisingly few studies have addressed this issue, in particular, at the comprehensive population genomic level. Herein we establish that substantial remodeling of the transcriptome of the human-specific pathogen Streptococcus pyogenes by horizontal gene flow and other evolutionary genetic changes is a central factor in precipitating and perpetuating epidemic disease. The data unambiguously show that the key outcome of these molecular events is evolution of a new, more virulent pathogenic genotype. Our findings provide new understanding of epidemic disease.Peer reviewe

Fluorescence‐based bowel anastomosis perfusion evaluation: results from the IHU‐IRCAD‐EAES EURO‐FIGS registry

Background: Anastomotic leakage (AL) is one of the dreaded complications following surgery in the digestive tract. Near-infrared fluorescence (NIRF) imaging is a means to intraoperatively visualize anastomotic perfusion, facilitating fluorescence image-guided surgery (FIGS) with the purpose to reduce the incidence of AL. The aim of this study was to analyze the current practices and results of NIRF imaging of the anastomosis in digestive tract surgery through the EURO-FIGS registry. Methods: Analysis of data prospectively collected by the registry members provided patient and procedural data along with the ICG dose, timing, and consequences of NIRF imaging. Among the included upper-GI, colorectal, and bariatric surgeries, subgroup analysis was performed to identify risk factors associated with complications. Results: A total of 1240 patients were included in the study. The included patients, 74.8% of whom were operated on for cancer, originated from 8 European countries and 30 hospitals. A total of 54 surgeons performed the procedures. In 83.8% of cases, a pre-anastomotic ICG dose was administered, and in 60.1% of cases, a post-anastomotic ICG dose was administered. A significant difference (p < 0.001) was found in the ICG dose given in the four pathology groups registered (range: 0.013–0.89 mg/kg) and a significant (p < 0.001) negative correlation was found between the ICG dose and BMI. In 27.3% of the procedures, the choice of the anastomotic level was guided by means of NIRF imaging which means that in these cases NIRF imaging changed the level of anastomosis which was first decided based on visual findings in conventional white light imaging. In 98.7% of the procedures, the use of ICG partly or strongly provided a sense of confidence about the anastomosis. A total of 133 complications occurred, without any statistical significance in the incidence of complications in the anastomoses, whether they were ICG-guided or not. Conclusion: The EURO-FIGS registry provides an insight into the current clinical practice across Europe with respect to NIRF imaging of anastomotic perfusion during digestive tract surgery

Identification of a novel zinc metalloprotease through a global analysis of clostridium difficile extracellular proteins

Clostridium difficile is a major cause of infectious diarrhea worldwide. Although the cell surface proteins are recognized to be important in clostridial pathogenesis, biological functions of only a few are known. Also, apart from the toxins, proteins exported by C. difficile into the extracellular milieu have been poorly studied. In order to identify novel extracellular factors of C. difficile, we analyzed bacterial culture supernatants prepared from clinical isolates, 630 and R20291, using liquid chromatography-tandem mass spectrometry. The majority of the proteins identified were non-canonical extracellular proteins. These could be largely classified into proteins associated to the cell wall (including CWPs and extracellular hydrolases), transporters and flagellar proteins. Seven unknown hypothetical proteins were also identified. One of these proteins, CD630_28300, shared sequence similarity with the anthrax lethal factor, a known zinc metallopeptidase. We demonstrated that CD630_28300 (named Zmp1) binds zinc and is able to cleave fibronectin and fibrinogen in vitro in a zinc-dependent manner. Using site-directed mutagenesis, we identified residues important in zinc binding and enzymatic activity. Furthermore, we demonstrated that Zmp1 destabilizes the fibronectin network produced by human fibroblasts. Thus, by analyzing the exoproteome of C. difficile, we identified a novel extracellular metalloprotease that may be important in key steps of clostridial pathogenesis

The Clostridium difficile Cell Wall Protein CwpV is Antigenically Variable between Strains, but Exhibits Conserved Aggregation-Promoting Function

Clostridium difficile is the main cause of antibiotic-associated diarrhea, leading to significant morbidity and mortality and putting considerable economic pressure on healthcare systems. Current knowledge of the molecular basis of pathogenesis is limited primarily to the activities and regulation of two major toxins. In contrast, little is known of mechanisms used in colonization of the enteric system. C. difficile expresses a proteinaceous array on its cell surface known as the S-layer, consisting primarily of the major S-layer protein SlpA and a family of SlpA homologues, the cell wall protein (CWP) family. CwpV is the largest member of this family and is expressed in a phase variable manner. Here we show CwpV promotes C. difficile aggregation, mediated by the C-terminal repetitive domain. This domain varies markedly between strains; five distinct repeat types were identified and were shown to be antigenically distinct. Other aspects of CwpV are, however, conserved. All CwpV types are expressed in a phase variable manner. Using targeted gene knock-out, we show that a single site-specific recombinase RecV is required for CwpV phase variation. CwpV is post-translationally cleaved at a conserved site leading to formation of a complex of cleavage products. The highly conserved N-terminus anchors the CwpV complex to the cell surface. Therefore CwpV function, regulation and processing are highly conserved across C. difficile strains, whilst the functional domain exists in at least five antigenically distinct forms. This hints at a complex evolutionary history for CwpV

Functional traits and phenotypic plasticity modulate species coexistence across contrasting climatic conditions

Functional traits are expected to modulate plant competitive dynamics. However, how traits and their plasticity in response to contrasting environments connect with the mechanisms determining species coexistence remains poorly understood. Here, we couple field experiments under two contrasting climatic conditions to a plant population model describing competitive dynamics between 10 annual plant species in order to evaluate how 19 functional traits, covering physiological, morphological and reproductive characteristics, are associated with species’ niche and fitness differences. We find a rich diversity of univariate and multidimensional associations, which highlight the primary role of traits related to water- and lightuse- efficiency for modulating the determinants of competitive outcomes. Importantly, such traits and their plasticity promote species coexistence across climatic conditions by enhancing stabilizing niche differences and by generating competitive trade-offs between species. Our study represents a significant advance showing how leading dimensions of plant function connect to the mechanisms determining the maintenance of biodiversity